API Reference

• geometricus package
  • Submodules
  • geometricus.geometricus module
    • Shapemer
    • Shapemers
    • Geometricus
      • Geometricus.protein_keys
      • Geometricus.shapemer_to_protein_indices
      • Geometricus.proteins_to_shapemers
      • Geometricus.shapemer_keys
      • Geometricus.proteins_to_shapemer_residue_indices
      • Geometricus.resolution
      • Geometricus.from_protein_files()
      • Geometricus.from_invariants()
      • Geometricus.map_shapemers_to_indices()
      • Geometricus.map_protein_to_shapemer_indices()
      • Geometricus.map_shapemer_to_residues()
      • Geometricus.get_count_matrix()
    • make_count_matrix()
  • geometricus.moment_utility module
    • nb_mean_axis_0()
    • MomentInfo
      • MomentInfo.moment_function
      • MomentInfo.mu_arguments
    • mu()
    • O_3()
    • O_4()
    • O_5()
    • F()
    • make_formula()
    • phi_2()
    • phi_3()
    • phi_4()
    • phi_5()
    • phi_6()
    • phi_7()
    • phi_8()
    • phi_9()
    • phi_10()
    • phi_11()
    • phi_12()
    • phi_13()
    • CI()
    • MomentType
      • MomentType.O_3
      • MomentType.O_4
      • MomentType.O_5
      • MomentType.F
      • MomentType.phi_2
      • MomentType.phi_3
      • MomentType.phi_4
      • MomentType.phi_5
      • MomentType.phi_6
      • MomentType.phi_7
      • MomentType.phi_8
      • MomentType.phi_9
      • MomentType.phi_10
      • MomentType.phi_11
      • MomentType.phi_12
      • MomentType.phi_13
      • MomentType.CI
      • MomentType.get_moments_from_coordinates()
    • get_moments_from_coordinates()
  • geometricus.protein_utility module
    • ProteinKey
    • Structure
      • Structure.name
      • Structure.length
      • Structure.coordinates
    • parse_structure_file()
    • get_structure_files()
    • group_indices()
    • get_alpha_indices()
    • get_beta_indices()
    • get_sequences_from_fasta_yield()
    • get_sequences_from_fasta()
    • get_rmsd()
    • get_rotation_matrix()
    • alignment_to_numpy()