Index

A

alignment_to_numpy() (in module geometricus.protein_utility)

C

CI (geometricus.moment_utility.MomentType attribute)

CI() (in module geometricus.moment_utility) coordinates (geometricus.protein_utility.Structure attribute)

F

F (geometricus.moment_utility.MomentType attribute) F() (in module geometricus.moment_utility)

from_invariants() (geometricus.geometricus.Geometricus class method) from_protein_files() (geometricus.geometricus.Geometricus class method)

G

Geometricus (class in geometricus.geometricus) geometricus.geometricus module geometricus.moment_utility module geometricus.protein_utility module get_alpha_indices() (in module geometricus.protein_utility) get_beta_indices() (in module geometricus.protein_utility)

get_count_matrix() (geometricus.geometricus.Geometricus method) get_moments_from_coordinates() (geometricus.moment_utility.MomentType method) (in module geometricus.moment_utility) get_rmsd() (in module geometricus.protein_utility) get_rotation_matrix() (in module geometricus.protein_utility) get_sequences_from_fasta() (in module geometricus.protein_utility) get_sequences_from_fasta_yield() (in module geometricus.protein_utility) get_structure_files() (in module geometricus.protein_utility) group_indices() (in module geometricus.protein_utility)

L

length (geometricus.protein_utility.Structure attribute)

M

make_count_matrix() (in module geometricus.geometricus) make_formula() (in module geometricus.moment_utility) map_protein_to_shapemer_indices() (geometricus.geometricus.Geometricus method) map_shapemer_to_residues() (geometricus.geometricus.Geometricus method) map_shapemers_to_indices() (geometricus.geometricus.Geometricus method) module geometricus.geometricus geometricus.moment_utility geometricus.protein_utility

moment_function (geometricus.moment_utility.MomentInfo attribute) MomentInfo (class in geometricus.moment_utility) MomentType (class in geometricus.moment_utility) mu() (in module geometricus.moment_utility) mu_arguments (geometricus.moment_utility.MomentInfo attribute)

N

name (geometricus.protein_utility.Structure attribute)

nb_mean_axis_0() (in module geometricus.moment_utility)

O

O_3 (geometricus.moment_utility.MomentType attribute) O_3() (in module geometricus.moment_utility) O_4 (geometricus.moment_utility.MomentType attribute)

O_4() (in module geometricus.moment_utility) O_5 (geometricus.moment_utility.MomentType attribute) O_5() (in module geometricus.moment_utility)

P

parse_structure_file() (in module geometricus.protein_utility) phi_10 (geometricus.moment_utility.MomentType attribute) phi_10() (in module geometricus.moment_utility) phi_11 (geometricus.moment_utility.MomentType attribute) phi_11() (in module geometricus.moment_utility) phi_12 (geometricus.moment_utility.MomentType attribute) phi_12() (in module geometricus.moment_utility) phi_13 (geometricus.moment_utility.MomentType attribute) phi_13() (in module geometricus.moment_utility) phi_2 (geometricus.moment_utility.MomentType attribute) phi_2() (in module geometricus.moment_utility) phi_3 (geometricus.moment_utility.MomentType attribute) phi_3() (in module geometricus.moment_utility) phi_4 (geometricus.moment_utility.MomentType attribute)

phi_4() (in module geometricus.moment_utility) phi_5 (geometricus.moment_utility.MomentType attribute) phi_5() (in module geometricus.moment_utility) phi_6 (geometricus.moment_utility.MomentType attribute) phi_6() (in module geometricus.moment_utility) phi_7 (geometricus.moment_utility.MomentType attribute) phi_7() (in module geometricus.moment_utility) phi_8 (geometricus.moment_utility.MomentType attribute) phi_8() (in module geometricus.moment_utility) phi_9 (geometricus.moment_utility.MomentType attribute) phi_9() (in module geometricus.moment_utility) protein_keys (geometricus.geometricus.Geometricus attribute) ProteinKey (in module geometricus.protein_utility) proteins_to_shapemer_residue_indices (geometricus.geometricus.Geometricus attribute) proteins_to_shapemers (geometricus.geometricus.Geometricus attribute)

R

resolution (geometricus.geometricus.Geometricus attribute)

S

Shapemer (in module geometricus.geometricus) shapemer_keys (geometricus.geometricus.Geometricus attribute)

shapemer_to_protein_indices (geometricus.geometricus.Geometricus attribute) Shapemers (in module geometricus.geometricus) Structure (class in geometricus.protein_utility)